Building a Standardised Statistical Reporting Toolbox in an Academic Oncology Clinical Trials Unit: The grstat R Package

📅 2026-01-20
📈 Citations: 0
Influential: 0
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🤖 AI Summary
This work addresses the inefficiencies in oncology clinical trial statistical workflows—often fragmented, leading to redundant efforts, poor collaboration, and inconsistent analyses—by developing grstat, an open-source R package that integrates standardized analytical tools within a governance framework featuring requirement traceability, peer review, automated testing, and phased validation. By unifying technical implementation with a structured, reproducible process, grstat establishes a shared, auditable, and maintainable analytical toolkit. Empirical application demonstrates that this approach substantially enhances analytical efficiency, consistency, and long-term maintainability, offering academic biostatistics teams a scalable and transferable collaborative paradigm.

Technology Category

Application Category

📝 Abstract
Academic Clinical Trial Units frequently face fragmented statistical workflows, leading to duplicated effort, limited collaboration, and inconsistent analytical practices. To address these challenges within an oncology Clinical Trial Unit, we developed grstat, an R package providing a standardised set of tools for routine statistical analyses. Beyond the software itself, the development of grstat is embedded in a structured organisational framework combining formal request tracking, peer-reviewed development, automated testing, and staged validation of new functionalities. The package is intentionally opinionated, reflecting shared practices agreed upon within the unit, and evolves through iterative use in real-world projects. Its development as an open-source project on GitHub supports transparent workflows, collective code ownership, and traceable decision-making. While primarily designed for internal use, this work illustrates a transferable approach to organising, validating, and maintaining a shared analytical toolbox in an academic setting. By coupling technical implementation with governance and validation principles, grstat supports efficiency, reproducibility, and long-term maintainability of biostatistical workflows, and may serve as a source of inspiration for other Clinical Trial Units facing similar organisational challenges.
Problem

Research questions and friction points this paper is trying to address.

statistical workflows
clinical trials
reproducibility
standardisation
oncology
Innovation

Methods, ideas, or system contributions that make the work stand out.

standardised statistical toolbox
opinionated R package
structured organisational framework
automated testing and validation
open-source biostatistics workflow
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D. Chaltiel
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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Alexis Cochard
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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Nusaibah Ibrahimi
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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Charlotte Bargain
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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Ikram Benchara
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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Anne Lourdessamy
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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A. Fraslin
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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Matthieu Texier
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France
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Livia Pierotti
Gustave Roussy, Office of Biostatistics and Epidemiology, Université Paris-Saclay, Villejuif, France; Inserm, Université Paris-Saclay, CESP U1018, Oncostat, labeled Ligue Contre le Cancer, Villejuif, France