The Dresden Dataset for 4D Reconstruction of Non-Rigid Abdominal Surgical Scenes

📅 2026-03-03
📈 Citations: 0
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🤖 AI Summary
This work addresses the lack of high-quality benchmark data for evaluating 4D reconstruction of non-rigid abdominal soft tissue deformation under realistic surgical conditions. To this end, we present the first multimodal dataset comprising synchronized endoscopic videos and ground-truth geometry captured via structured light, encompassing diverse non-rigid deformations, instrument occlusions, and precise camera poses. Data were acquired using a da Vinci Xi endoscope and a Zivid structured-light camera, with multimodal alignment achieved through optical tracking, ICP refinement, and semi-automatic registration. The dataset includes 98 sequences, over 300,000 video frames, and 369 point clouds, and provides instrument masks and rectified images. Crucially, it enables the first quantitative evaluation of both visible and occluded regions, establishing a rigorous benchmark for SLAM, 4D reconstruction, and depth estimation in non-rigid surgical scenarios.

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📝 Abstract
The D4D Dataset provides paired endoscopic video and high-quality structured-light geometry for evaluating 3D reconstruction of deforming abdominal soft tissue in realistic surgical conditions. Data were acquired from six porcine cadaver sessions using a da Vinci Xi stereo endoscope and a Zivid structured-light camera, registered via optical tracking and manually curated iterative alignment methods. Three sequence types - whole deformations, incremental deformations, and moved-camera clips - probe algorithm robustness to non-rigid motion, deformation magnitude, and out-of-view updates. Each clip provides rectified stereo images, per-frame instrument masks, stereo depth, start/end structured-light point clouds, curated camera poses and camera intrinsics. In postprocessing, ICP and semi-automatic registration techniques are used to register data, and instrument masks are created. The dataset enables quantitative geometric evaluation in both visible and occluded regions, alongside photometric view-synthesis baselines. Comprising over 300,000 frames and 369 point clouds across 98 curated recordings, this resource can serve as a comprehensive benchmark for developing and evaluating non-rigid SLAM, 4D reconstruction, and depth estimation methods.
Problem

Research questions and friction points this paper is trying to address.

4D reconstruction
non-rigid deformation
surgical scene
abdominal soft tissue
3D reconstruction
Innovation

Methods, ideas, or system contributions that make the work stand out.

4D reconstruction
non-rigid deformation
surgical scene dataset
structured-light scanning
multi-modal registration
R
Reuben Docea
Department of Translational Surgical Oncology, National Center for Tumor Diseases (NCT), NCT/UCC Dresden, a partnership between DKFZ, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, and Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany
R
Rayan Younis
Department for Visceral, Thoracic and Vascular Surgery, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany
Y
Yonghao Long
Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China
M
Maxime Fleury
Department of Translational Surgical Oncology, National Center for Tumor Diseases (NCT), NCT/UCC Dresden, a partnership between DKFZ, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, and Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany
J
Jinjing Xu
Department of Translational Surgical Oncology, National Center for Tumor Diseases (NCT), NCT/UCC Dresden, a partnership between DKFZ, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, and Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany
Chenyang Li
Chenyang Li
National Center for Tumor Diseases (NCT), Dresden, Germany
A
André Schulze
Department for Visceral, Thoracic and Vascular Surgery, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany
A
Ann Wierick
Department for Visceral, Thoracic and Vascular Surgery, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany
J
Johannes Bender
Department of Translational Surgical Oncology, National Center for Tumor Diseases (NCT), NCT/UCC Dresden, a partnership between DKFZ, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, and Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany
Micha Pfeiffer
Micha Pfeiffer
Researcher, NCT Dresden
Surgical AssistanceMachine Learning
Q
Qi Dou
Department of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong, China
Martin Wagner
Martin Wagner
University Hospital Carl Gustav Carus at Technische Universität Dresden, Germany
General SurgerySurgical OncologyMinimally Invasive SurgeryCognitive Surgical RoboticsArtificial Intelligence
Stefanie Speidel
Stefanie Speidel
Professor, National Center for Tumor Diseases (NCT) Dresden
Computer- and robotic-assisted surgerySurgical data science