Training-Free Zero-Shot Anomaly Detection in 3D Brain MRI with 2D Foundation Models

📅 2026-02-16
📈 Citations: 0
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🤖 AI Summary
Existing zero-shot anomaly detection methods for 3D brain MRI are limited by their reliance on slice-level features, which neglect the intrinsic three-dimensional spatial structure among voxels. This work proposes a training-free, prompt-free, and supervision-free zero-shot anomaly detection framework that leverages multi-axis 2D foundation models to extract features from orthogonal slices, aggregates them into 3D local voxel tokens enriched with cubic spatial context, and directly applies distance-based batch anomaly scoring. To the best of our knowledge, this is the first approach to achieve fully training-free zero-shot anomaly detection on 3D brain MRI volumes. The method efficiently produces compact 3D representations on standard GPUs, successfully extending the zero-shot capabilities of 2D foundation models to full 3D volumes while maintaining both simplicity and robustness.

Technology Category

Computer Vision: 3D Computer VisionMachine Learning: Multimodal LearningData Mining & Knowledge Management: Anomaly/Outlier Detection

Application Category

Graph Algorithms and Modeling for the Web: Foundation models and LLMs for Web-related graphsWeb Mining and Content Analysis: Large pretrained models with web dataSearch and Retrieval-Augmented AI: Web learning to rank, online learning, and counterfactual learning for ranking
📝 Abstract
Zero-shot anomaly detection (ZSAD) has gained increasing attention in medical imaging as a way to identify abnormalities without task-specific supervision, but most advances remain limited to 2D datasets. Extending ZSAD to 3D medical images has proven challenging, with existing methods relying on slice-wise features and vision-language models, which fail to capture volumetric structure. In this paper, we introduce a fully training-free framework for ZSAD in 3D brain MRI that constructs localized volumetric tokens by aggregating multi-axis slices processed by 2D foundation models. These 3D patch tokens restore cubic spatial context and integrate directly with distance-based, batch-level anomaly detection pipelines. The framework provides compact 3D representations that are practical to compute on standard GPUs and require no fine-tuning, prompts, or supervision. Our results show that training-free, batch-based ZSAD can be effectively extended from 2D encoders to full 3D MRI volumes, offering a simple and robust approach for volumetric anomaly detection.
Problem

Research questions and friction points this paper is trying to address.

zero-shot anomaly detection
3D brain MRI
volumetric structure
training-free
medical imaging
Innovation

Methods, ideas, or system contributions that make the work stand out.

zero-shot anomaly detection
3D brain MRI
training-free
foundation models
volumetric tokens
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T
Tai Le-Gia
Department of Mathematics, Chungnam National University, South Korea
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Jaehyun Ahn
Department of Mathematics, Chungnam National University, South Korea