Practical Algebraic Parameter Estimation for Noisy Data via Gaussian Process Regression

📅 2026-09-24
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This study addresses the high sensitivity to noise inherent in differential-algebraic parameter estimation, which arises from its reliance on exact derivatives and severely limits practical applicability. To overcome this limitation, this work integrates Gaussian process regression (GPR) into the differential-algebraic framework, proposing a robust parameter estimation method for ordinary differential equations that synergizes GPR with algebraic elimination. Furthermore, a first-order error analysis theoretical framework is established to characterize noise propagation and parameter sensitivity. Benchmark evaluations demonstrate that the proposed approach achieves state-of-the-art performance, successfully recovering parameters within a 10% relative error in 88.5% of experimental runs. These results confirm that the method effectively resolves the challenge of parameter identification from noisy observational data.
📝 Abstract
Parameter estimation for ordinary differential equation (ODE) models is a fundamental task that is often complicated by the limitations of conventional optimization-based methods. In theory, differential-algebraic approaches offer an appealing alternative: they reduce the problem to polynomial system solving and do not require user-supplied initial guesses for parameter values. In practice, however, algebraic methods have been limited by their sensitivity to measurement noise, because they require accurate derivatives of observed outputs. In this work, we integrate Gaussian Process Regression (GPR) into the differential-algebraic method and derive a first-order error analysis in terms of noise level and algebraic sensitivity. We evaluate the method across several noise levels on a benchmark of 25 dynamical systems arising in applications including mechanical engineering and systems biology. The proposed method achieves the highest aggregate performance among the methods considered, recovering all sought parameter values and initial conditions to within 10% relative error in 88.5% of runs. These results demonstrate that robust derivative estimation can make differential-algebraic parameter estimation practical for dense, noisy synthetic data while retaining key advantages of the algebraic formulation.
Problem

Research questions and friction points this paper is trying to address.

parameter estimation
ordinary differential equations
differential-algebraic methods
measurement noise
Gaussian Process Regression
Innovation

Methods, ideas, or system contributions that make the work stand out.

Gaussian Process Regression
Parameter Estimation
Differential-Algebraic Method
Ordinary Differential Equations
Robust Derivative Estimation
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Oren Bassik
CUNY Graduate Center, Ph.D. Program in Mathematics, 365 Fifth Avenue, New York, NY 10016, USA
A
Alexander Demin
Laboratoire d’informatique de l’École polytechnique, LIX, UMR 7161, CNRS, 1 rue Honoré d’Estienne d’Orves, 91120 Palaiseau, France
Alexey Ovchinnikov
Alexey Ovchinnikov
CUNY Queens College and Graduate Center
Differential AlgebraSymbolic ComputationMathematical Biology