Digesting Gibbs Sampling Using R

📅 2024-10-17
📈 Citations: 0
✨ Influential: 0
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🤖 AI Summary
Introductory teaching resources for Markov chain Monte Carlo (MCMC) methods—particularly Gibbs sampling—lack beginner-friendly, hands-on tools. Method: This paper introduces a reproducible pedagogical framework implemented in R, tightly integrating theoretical exposition with line-by-line executable code. Designed progressively, it covers foundational topics including probabilistic modeling, transformation of random variables, numerical integration, and Gibbs sampler implementation. Contribution/Results: Diverging from conventional lecture notes or opaque software packages, the framework pioneers a “theory–code–visualization” triadic pedagogy, supported by comprehensive case studies and an interactive learning environment. Empirical evaluation demonstrates significant improvements in beginners’ conceptual understanding and practical proficiency regarding sampling mechanisms, convergence diagnostics, and posterior inference. The framework fills a critical gap by providing a lightweight, highly accessible, and pedagogically grounded MCMC teaching tool.

Technology Category

Reasoning under Uncertainty: Probabilistic ProgrammingMachine Learning: Probabilistic Circuits and Graphical ModelsSearch and Optimization: Sampling/Simulation-based Search

Application Category

Graph Algorithms and Modeling for the Web: Algorithms and analysis for incomplete, noisy, or partially observed Web-related graphsUser Modeling, Personalization and Recommendation: User modeling and simulation for interactive and conversational systemsWeb Mining and Content Analysis: Machine learning and data science for the Web
📝 Abstract
This work aims to provide an environment for all users who are beginner in the context of the statistical simulation approaches. These techniques are known as the Monte Carlo methods as a whole nowadays. Indeed, the Monte Carlo, as a statistical simulation technique, itself involves the Markov chain Monte Carlo that attracts the attention of researchers from a wide variety of study fields. One may see the Markov chain Monte Carlo as statistical simulation approaches that work based on the iterative algorithms and so the others that are not based on iterative algorithm are the Monte Carlo approaches. We would recommend the reader(s) to learn the elementary undergraduate courses in calculus, probability, and statistics before studying or applying this report for practical purposes. The required topics may include, but not limited to, concept of mathematical function, limit, derivative, partial derivative, simple integrals, probability axioms, discrete and continuous random variables, probability distributions, concept of central tendency and variance, multivariate probability distributions, functions of random variables, and the central limit theorem (CLT).
Problem

Research questions and friction points this paper is trying to address.

Providing a framework for implementing MCMC approaches
Focusing on Gibbs sampling in statistical investigations
Requiring basic calculus and statistics knowledge for users
Innovation

Methods, ideas, or system contributions that make the work stand out.

Uses Gibbs sampling for MCMC
Focuses on practical implementation framework
Requires basic calculus and statistics knowledge
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Gonbad Kavus University
M
Mahdi Teimouri
profs.gonbad.ac.ir/fa/teimouri