Pathologist Attention-Aligned Report Generation for Prostate Histopathology

๐Ÿ“… 2026-07-21
๐Ÿ“ˆ Citations: 0
โœจ Influential: 0
๐Ÿ“„ PDF
๐Ÿค– AI Summary
This study addresses the challenge that existing computational pathology report generation models struggle to emulate pathologistsโ€™ visual attention to diagnostically critical regions. To bridge this gap, the authors introduce a novel multimodal dataset comprising real-world, multiscale viewport trajectories from practicing pathologists, aligned with their verbal diagnostic descriptions. Leveraging this data, they design an attention alignment loss function to fine-tune a Transformer-based vision-language model, explicitly guiding its image patch attention distribution to match that of human experts. Evaluated on prostate cancer report generation and visual question answering tasks, the proposed method achieves an average improvement of 10.9% in standard NLP metrics and a 19.3% increase in accuracy across five clinically essential report components. Moreover, the generated attention maps demonstrate significantly higher fidelity to actual pathologist gaze patterns.
๐Ÿ“ Abstract
The allocation of visual attention by pathologists during cancer diagnosis is a highly selective process that critically shapes the information extracted from whole-slide images (WSIs). Human attention helps medical imaging tasks such as classification and segmentation, and becomes a strong semantic cue for identifying diagnostically informative regions for report generation. In this paper, we introduce human attention into the training of pathologist report generation models. To this end, we collected a multimodal human-attention dataset of 121 prostate WSIs annotated with pathologists' multi-scale viewport trajectories synchronized with the pathologists' verbal descriptions and cursor movements for five clinically relevant components (e.g., Gleason patterns). Using this dataset, we finetune two report generation models with an attention-alignment loss that regularizes the model attention over image patches to match the distribution of pathologist attention. We evaluate our approach on prostate cancer report generation and visual question answering using two models with different internal attention mechanisms (i.e., how image tokens are integrated into the language decoder). Experiments show average gains of 10.9% on NLP-based metrics and 19.3% in accuracy across five clinically relevant report components. Further, model attention maps extracted at inference time, with minimal computational overhead, align more closely with pathologist attention, providing stronger visual support for the generated reports by highlighting the regions that most influence the output.
Problem

Research questions and friction points this paper is trying to address.

pathologist attention
report generation
prostate histopathology
whole-slide images
visual attention alignment
Innovation

Methods, ideas, or system contributions that make the work stand out.

attention alignment
pathologist attention
report generation
whole-slide image
multimodal dataset
๐Ÿ”Ž Similar Papers
No similar papers found.
R
Ruoyu Xue
Department of Computer Science, Stony Brook University, USA
S
Suryakant Singh
Department of Biomedical Informatics, Stony Brook University, USA
Souradeep Chakraborty
Souradeep Chakraborty
Applied Scientist, Amazon
Computer VisionGenerative AIRecommendation Systems
Pierre Marza
Pierre Marza
Postdoctoral Researcher, CentraleSupelec
Deep LearningComputer VisionMedical Imaging
O
Oksana Yaskiv
Department of Pathology and Laboratory Medicine, Northwell Health Laboratories
C
Constantin Friedman
Department of Pathology and Laboratory Medicine, Northwell Health Laboratories
N
Natallia Sheuka
Department of Pathology and Laboratory Medicine, Northwell Health Laboratories
P
Paul Friedman
Department of Pathology and Laboratory Medicine, Northwell Health Laboratories
B
Bharat Ramlal
Department of Pathology and Laboratory Medicine, Northwell Health Laboratories
B
Beatrice Knudsen
Department of Pathology, University of Utah School of Medicine
Rajarsi Gupta
Rajarsi Gupta
Biomedical Informatics, Stony Brook University
Biomedical Informatics
Joel Saltz
Joel Saltz
SUNY Distinguished Professor and Chair of Biomedical Informatics, Stony Brook University
High End ComputingSystems SoftwareBiomedical InformaticsPathology Informatics
Prateek Prasanna
Prateek Prasanna
Associate Professor, Stony Brook University
Medical VisionBiomedical image analysisRadiogenomicsRadiomicsComputational Pathology
Gregory Zelinsky
Gregory Zelinsky
Professor of Psychology and Computer Science, Stony Brook University
visual attentionvisual searchobject detection
Dimitris Samaras
Dimitris Samaras
Stony Brook University
Computer VisionMachine LearningComputer GraphicsMedical Imaging