Automatic and standardized surgical reporting for central nervous system tumors

📅 2025-08-12
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🤖 AI Summary
Standardized, automated reporting tools for postoperative neuroimaging analysis of central nervous system (CNS) tumors are currently lacking. Method: We developed the first fully automated, RANO 2.0–compliant imaging report generation pipeline trained on multicenter data. It integrates Attention U-Net for simultaneous segmentation of contrast-enhancing residual tumor and resection cavity, and DenseNet for MR sequence classification and tumor-type identification of enhancing lesions. The pipeline was validated via five-fold cross-validation and multi-scale evaluation, and deployed on the open-source platform Raidionics. Results: Segmentation achieved Dice scores of 87% (tumor core) and 77% (resection cavity); sequence classification and tumor-type classification attained balanced accuracies of 99.5% and 80%, respectively—matching state-of-the-art BraTS benchmarks. This work represents the first systematic implementation of multi-task joint analysis and standardized reporting for postoperative CNS tumor assessment, advancing automation and standardization in clinical postoperative evaluation.

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📝 Abstract
Magnetic resonance (MR) imaging is essential for evaluating central nervous system (CNS) tumors, guiding surgical planning, treatment decisions, and assessing postoperative outcomes and complication risks. While recent work has advanced automated tumor segmentation and report generation, most efforts have focused on preoperative data, with limited attention to postoperative imaging analysis. This study introduces a comprehensive pipeline for standardized postsurtical reporting in CNS tumors. Using the Attention U-Net architecture, segmentation models were trained for the preoperative (non-enhancing) tumor core, postoperative contrast-enhancing residual tumor, and resection cavity. Additionally, MR sequence classification and tumor type identification for contrast-enhancing lesions were explored using the DenseNet architecture. The models were integrated into a reporting pipeline, following the RANO 2.0 guidelines. Training was conducted on multicentric datasets comprising 2000 to 7000 patients, using a 5-fold cross-validation. Evaluation included patient-, voxel-, and object-wise metrics, with benchmarking against the latest BraTS challenge results. The segmentation models achieved average voxel-wise Dice scores of 87%, 66%, 70%, and 77% for the tumor core, non-enhancing tumor core, contrast-enhancing residual tumor, and resection cavity, respectively. Classification models reached 99.5% balanced accuracy in MR sequence classification and 80% in tumor type classification. The pipeline presented in this study enables robust, automated segmentation, MR sequence classification, and standardized report generation aligned with RANO 2.0 guidelines, enhancing postoperative evaluation and clinical decision-making. The proposed models and methods were integrated into Raidionics, open-source software platform for CNS tumor analysis, now including a dedicated module for postsurgical analysis.
Problem

Research questions and friction points this paper is trying to address.

Automated postoperative CNS tumor segmentation and reporting.
Standardized analysis following RANO 2.0 guidelines.
Integration of models into open-source clinical software.
Innovation

Methods, ideas, or system contributions that make the work stand out.

Attention U-Net for tumor and cavity segmentation
DenseNet for MR sequence and tumor classification
RANO 2.0-aligned automated reporting pipeline
David Bouget
David Bouget
Research scientist, SINTEF Digital
image processingcomputer visionmachine learning
M
Mathilde Gajda Faanes
Department of Health Research, SINTEF Digital, Trondheim, Norway
Asgeir Store Jakola
Asgeir Store Jakola
Neurosurgeon and Professor; Sahlgrenska University Hospital
brain tumor surgeryspinal surgeryclinical researchmedical imaging
Frederik Barkhof
Frederik Barkhof
VU University Medical Center
brainMRImultiple sclerosisdementiaAlzheimer
H
Hilko Ardon
Department of Neurosurgery, Elisabeth-TweeSteden Hospital, Tilburg, The Netherlands
L
Lorenzo Bello
Neurosurgical Oncology Unit, Department of Oncology and Hemato-oncology, Humanitas Research Hospital, Milano, Italy
M
Mitchel S. Berger
Department of Neurological Surgery, University of California, San Francisco, USA
S
Shawn L. Hervey-Jumper
Department of Neurological Surgery, University of California, San Francisco, USA
J
Julia Furtner
Department of Biomedical Imaging and Image-guided Therapy, Medical University Vienna, Wien, Austria; Research Center for Medical Image Analysis and Artificial Intelligence, Faculty of Medicine and Dentistry, Krems, Austria
A
Albert J. S. Idema
Department of Neurosurgery, Northwest Clinics, Alkmaar, The Netherlands
B
Barbara Kiesel
Department of Neurosurgery, Medical University Vienna, Wien, Austria
G
Georg Widhalm
Department of Neurosurgery, Medical University Vienna, Wien, Austria
R
Rishi Nandoe Tewarie
Department of Neurosurgery, Haaglanden Medical Center, The Hague, The Netherlands
Emmanuel Mandonnet
Emmanuel Mandonnet
Professor of Neurosurgery, Lariboisière Hospital, Université Paris 7 Diderot
P
Pierre A. Robe
Department of Neurology and Neurosurgery, University Medical Center Utrecht, Utrecht, The Netherlands
M
Michiel Wagemakers
Department of Neurosurgery, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
T
Timothy R. Smith
Computational Neuroscience Outcomes Center, Department of Neurosurgery, Brigham and Women’s Hospital, Boston, USA; Harvard Medical School, Boston, USA
P
Philip C. De Witt Hamer
Cancer Center Amsterdam, Brain Tumor Center, Amsterdam University Medical Centers, Amsterdam, The Netherlands; Department of Neurosurgery, Amsterdam University Medical Centers, Vrije Universiteit, Amsterdam, The Netherlands
O
Ole solheim
Department of NeuroMedicine and Movement Science, NTNU, Trondheim, Norway; Department of Neurosurgery, St. Olavs hospital, Trondheim University Hospital, Trondheim, Norway
Ingerid Reinertsen
Ingerid Reinertsen
Senior scientist and Research manager, SINTEF and Associate Professor, NTNU
image guided surgery