Radiomic Feature Selection Using Gradient Loss of Deep Neural Network for Lung Cancer Stage Detection

📅 2026-06-03
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🤖 AI Summary
This study addresses the limited generalization performance of lung cancer staging models caused by feature redundancy in high-dimensional, small-sample radiomics data. To this end, the authors propose a Gradient Loss-based Recursive Feature Elimination (GL-RFE) framework, which, for the first time, incorporates the gradient sensitivity of deep neural network loss functions with respect to input features into radiomics feature selection. By recursively eliminating low-contribution features, GL-RFE effectively captures nonlinear feature interactions, thereby enhancing both model interpretability and generalization. Starting from 106 CT radiomic features extracted via PyRadiomics, GL-RFE identifies a compact subset of 15 key features, achieving 90.22% accuracy and 90.16% F1-score on the test set—significantly outperforming conventional methods.
📝 Abstract
Radiomics enables extraction of quantitative imaging biomarkers from medical images and has become an important tool for computer-aided cancer diagnosis. However, radiomics datasets are typically high-dimensional with limited samples, making feature selection a critical step for building reliable predictive models. This study proposes a Gradient-Loss Recursive Feature Elimination (GL-RFE) framework that integrates gradient sensitivity analysis from a deep neural network to identify the most influential radiomic features for lung cancer stage detection. A total of 106 radiomic features were extracted from chest Computed Tomography (CT) scans using the PyRadiomics extension of the 3D Slicer platform. The proposed method evaluates feature importance by computing gradients of the network loss with respect to input features and recursively eliminates features with minimal contribution. The resulting top-15 radiomic features are used to train a deep neural network classifier for distinguishing early-stage and advanced-stage lung cancer. The proposed framework achieves strong classification performance, with accuracy of 90.22%, precision of 90.10%, recall of 90.24%, and F1-score of 90.16% on the test dataset. Visualization analyses, including correlation heat maps and distribution plots, further confirm reduced feature redundancy and improved class separability. Compared to conventional feature selection techniques, GL-RFE effectively captures nonlinear feature interactions and enhances model generalization. The presented protocol provides a reproducible and interpretable methodology for radiomics-based cancer stage detection and is particularly suitable for high-dimensional, small-sample biomedical datasets, with potential applications in other domains such as genomics and multimodal clinical analysis.
Problem

Research questions and friction points this paper is trying to address.

radiomics
feature selection
lung cancer staging
high-dimensional data
small-sample dataset
Innovation

Methods, ideas, or system contributions that make the work stand out.

radiomics
feature selection
deep neural network
gradient-based importance
lung cancer staging
H
Hina Shakir
Department of Software Engineering, Bahria University, Karachi, Pakistan
M
Mohammad Mohatram
Global College of Engineering and Technology, Muscat, Oman
J
Javeed Hussain
Global College of Engineering and Technology, Muscat, Oman
S
Syed Rizwan Ali
Software Engineering & Business Incubation Center, Bahria University Karachi, Pakistan
M
Muhammad Irfan Memon
Global College of Engineering and Technology, Muscat, Oman