Beyond Gradient Flow: Identifiability and Recovery from Distribution Snapshots

📅 2026-09-28
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🤖 AI Summary
This study addresses the identifiability problem arising from the underdetermined Fokker-Planck equation when inferring dynamics from distributional snapshots. We propose a method that separates instantaneous source terms using multi-time snapshot constraints, eliminating gauge ambiguity by stacking divergence operator kernels to recover the underlying dynamics field. Theoretically, we characterize the gauge blind spots inherent in single-time constraints, prove that cross-marginal variations render hidden circulations observable, and establish elimination conditions for polynomial gauge directions. Methodologically, our approach integrates smooth test function estimation, retention of known diffusion terms, and finite-sample error separation techniques. Finally, we derive matching lower and upper bounds for conditional convergence, validate predicted gauge contraction, and elucidate the design tension between cross-slice information and covariance whitening.
📝 Abstract
Inferring dynamics from snapshots of evolving distributions is fundamentally underdetermined: the Fokker-Planck equation constrains the drift $F$ only through its score-weighted divergence $\nabla\cdot F+F\cdot\nabla\log\rho$, leaving a $\rho$-solenoidal gauge invisible to any single-time constraint. Time-indexed transport formulations cannot resolve this ambiguity: every admissible marginal path admits a curl-free explanation, minimum-action reconstruction selects it, and marginal fit alone cannot distinguish dynamically inequivalent explanations. Requiring one autonomous field to explain several marginals instead makes part of the hidden circulation visible as $\nabla\log\rho$ changes across marginals. Separating instantaneous Fokker-Planck source constraints from the snapshot experiment, we show that the source constraints identify the field modulo the kernel of a stacked score-weighted divergence operator. For generic Gaussian shape variation, source constraints at $K\ge m$ time points in intrinsic dimension $m$ eliminate every polynomial gauge direction, whereas finitely many density snapshots alone admit aliasing; we give the obstruction explicitly. At a Gaussian anchor, for Sobolev smoothness $s$ and $n$ samples per time point, we derive a conditional lower rate $(nK)^{-2s/(2s+m+1)}$ for the tangent snapshot experiment, with a matching upper rate in a degreewise benchmark. Strong-form fitting is non-orthogonal to score error and cannot be repaired by spectral filtering. Instead, we estimate using smooth test functions while retaining the known diffusion term, and derive a finite-sample bound that separates sampling error from fixed-grid quadrature bias. Planted-circulation experiments confirm the predicted gauge contraction and expose a design tension between cross-slice information and covariance-aware whitening.
Problem

Research questions and friction points this paper is trying to address.

distribution snapshots
drift identifiability
Fokker-Planck equation
gauge ambiguity
dynamics recovery
Innovation

Methods, ideas, or system contributions that make the work stand out.

Fokker-Planck equation
distribution snapshots
gauge identifiability
minimax estimation rate
smooth test functions
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Nam D. Nguyen
VIB, Center for Molecular Neurology, Antwerp, Belgium; VIB, Center for AI and Computational Biology, Leuven, Belgium; Faculty of Pharmaceutical, Biomedical and Veterinary Sciences, University of Antwerp, Antwerp, Belgium; Research Foundation – Flanders (FWO), Brussels, Belgium
V
Valeriya Malysheva
VIB, Center for Molecular Neurology, Antwerp, Belgium; VIB, Center for AI and Computational Biology, Leuven, Belgium; Faculty of Pharmaceutical, Biomedical and Veterinary Sciences, University of Antwerp, Antwerp, Belgium; Trinity Hall, University of Cambridge, Cambridge, UK