Benchmarking AI Agents for Addressing Scientific Challenges Across Scales

๐Ÿ“… 2026-06-10
๐Ÿ“ˆ Citations: 0
โœจ Influential: 0
๐Ÿ“„ PDF
๐Ÿค– AI Summary
Current AI agents lack systematic evaluation in authentic scientific research settings, as prevailing benchmarks fail to capture the complexity, heterogeneity, and long-horizon reasoning inherent in real-world scientific tasks. To address this gap, this work proposes SciAgentArenaโ€”the first systematic benchmark enabling interactive, open-ended evaluation of scientific agents. It comprises approximately 200 step-validated, multi-domain real-world research tasks within an agent-agnostic interactive environment. Empirical evaluation using this framework reveals that while existing agents can handle structured data analysis, they exhibit significant limitations in autonomous exploration, innovative insight generation, and solving open-ended scientific problems. The study further identifies recurring failure patterns, offering clear directions for future improvements in scientific AI agent design.
๐Ÿ“ Abstract
AI agents are increasingly being developed to accelerate scientific discovery, yet their practical capabilities in real research settings remain poorly understood. Existing benchmarks for AI agents rarely capture the complexity, heterogeneity, and extended reasoning required by scientific work, whereas benchmarks for scientific tasks often reduce research to static, direct problems and provide limited support for interactive evaluation. Here, we introduce SciAgentArena, a systematic benchmark for evaluating AI agents in real-world scientific research scenarios drawn from emerging needs across multiple domains. SciAgentArena comprises approximately 200 tasks with stepwise verification and an interactive, agent-agnostic environment for assessing diverse AI agents. Using this benchmark, we find that current agents can contribute effectively to well-specified data-analysis workflows, particularly when the task structure and evaluation criteria are clear. However, their performance remains uneven across scientific contexts: agents struggle to generate genuinely novel insights, sustain self-directed exploration, and formulate robust solutions for open-ended research questions. We further characterize common failure modes across agents and identify opportunities for improving their reliability, autonomy, and scientific reasoning. Together, SciAgentArena provides a practical framework for measuring progress in AI agents for science and for guiding the design of future agents capable of addressing complex scientific challenges. Full codes, tasks, and datasets can be accessed via this link: https://sciagentarena.github.io/.
Problem

Research questions and friction points this paper is trying to address.

AI agents
scientific discovery
benchmarking
interactive evaluation
open-ended research
Innovation

Methods, ideas, or system contributions that make the work stand out.

AI agents
scientific benchmarking
interactive evaluation
stepwise verification
open-ended research
Tianyu Liu
Tianyu Liu
Yale University
Machine learningBiostatistics
A
Allen Xin Wang
Yale University, CT, USA
A
Antonia Panescu
Yale University, CT, USA
L
Lisa Xinyi Chen
Yale University, CT, USA
W
Wenxin Long
The Pennsylvania State University, PA, USA
Xinyu Wei
Xinyu Wei
PolyU & PKU
Computer VisionDeep Learning
Y
Yueqian Jing
Yale University, CT, USA
Ziyao Zeng
Ziyao Zeng
Yale University
Computer VisionMachine LearningRoboticsMultimodal Learning
J
Jihang Chen
Northeastern University, MA, USA
S
Sihan Jiang
Yale University, CT, USA
Ziqing Wang
Ziqing Wang
Northwestern University
Efficient AI
Siyi Gu
Siyi Gu
Stanford University
Siyu Chen
Siyu Chen
Ph.D. of S&DS, Yale University
StatisticsDLLLMeconomicsRL
X
Xinyang Hu
Yale University, CT, USA
H
Haoran Shao
Yale University, CT, USA
L
Leqi Xu
Yale University, CT, USA
W
Wangjie Zheng
Yale University, CT, USA
Z
Zhiyuan Cao
Yale University, CT, USA
A
Ada Fang
Harvard University, MA, USA
Botao Yu
Botao Yu
PhD student, Ohio State University
AI for ScienceNLPAI Music
K
Kunyang Sun
UC Berkeley, CA, USA
R
Rex Ying
Yale University, CT, USA
Arman Cohan
Arman Cohan
Yale University; Allen Institute for AI
Natural Language ProcessingMachine LearningArtificial Intelligence
Qingyu Chen
Qingyu Chen
Biomedical Informatics & Data Science, Yale University; NCBI-NLM, National Institutes of Health
Text miningMachine learningData curationBioNLPMedical Imaging Analysis
Lingzhou Xue
Lingzhou Xue
Professor of Statistics, The Pennsylvania State University
High Dimensional StatisticsStatistical LearningStatistical Network AnalysisNonconvex OptimizationData Science