S3C-LLM: Skill-Code Guided Agentic Language Models for Spectrum-to-Structure Elucidation

📅 2026-08-31
📈 Citations: 0
✨ Influential: 0
📄 PDF
🤖 AI Summary
本文提出S3C-LLM,通过技能指导和代码执行的方式解决光谱到结构解析的问题,改进了现有基于大语言模型的方法,实现了更准确的分子结构预测。
📝 Abstract
Spectroscopic structure elucidation is central to molecular analysis, but recent Large Language Model (LLM)-based methods mostly formulate it as direct spectrum-to-SMILES generation. Although this paradigm can leverage paired spectral data, it does not explicitly model the analytical workflow used by spectroscopists, such as diagnostic peak interpretation, fragment reasoning, formula constraints, and chemical consistency checking. In this paper, we introduce S3C-LLM, a skill-guided and code-grounded agentic LLM for spectrum-to-structure elucidation. Rather than directly predicting a molecule, S3C-LLM retrieves modality-specific spectroscopy skills, executes analysis code to instantiate these skills on the input spectra, and integrates the resulting peak-level evidence and formula constraints before generating SMILES. Specifically, we contribute a self-evolving spectroscopy skill library, a thinking-augmented skill-code trajectory construction pipeline, and a two-stage training strategy that teaches Qwen3-4B through supervised fine-tuning (SFT) followed by our proposed step-level reinforcement learning (RL). Experiments on diverse benchmarks show that S3C-LLM consistently outperforms current general LLMs and spectrum-specific models across spectra, while using less than 1/10th of SpectraLLM's training corpus.
Problem

Research questions and friction points this paper is trying to address.

Spectroscopic structure elucidation
Large Language Model (LLM)
spectrum-to-SMILES generation
analytical workflow
diagnostic peak interpretation
Innovation

Methods, ideas, or system contributions that make the work stand out.

Skill-Code Guided
Agentic Language Model
Spectrum-to-Structure Elucidation
Reinforcement Learning
Self-Evolving Skill Library
🔎 Similar Papers
💼 Related Jobs
No related jobs found.
X
Xuanle Zhao
The Key Laboratory of Cognition and Decision Intelligence for Complex Systems, Institute of Automation, Chinese Academy of Sciences; School of Artificial Intelligence, University of Chinese Academy of Sciences
X
Xinyuan Cai
The Key Laboratory of Cognition and Decision Intelligence for Complex Systems, Institute of Automation, Chinese Academy of Sciences
X
Xiang Cheng
The Key Laboratory of Cognition and Decision Intelligence for Complex Systems, Institute of Automation, Chinese Academy of Sciences
B
Bo Xu
The Key Laboratory of Cognition and Decision Intelligence for Complex Systems, Institute of Automation, Chinese Academy of Sciences; School of Artificial Intelligence, University of Chinese Academy of Sciences