emd-based consistency loss

Designs and implements loss functions that compute the Earth Mover’s Distance between one-dimensional distributions of tissue/label mass along an anatomical axis (e.g., anterior–posterior) or between pixel/voxel intensity distributions, and integrates that EMD-based penalty into training to enforce pixel/voxel-level self-consistency and drive generators or segmenters toward physically plausible spatial placement.

emd-basedconsistencyloss

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Must-Read Papers

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Medical image segmentation models trained with region-based losses, such as Dice loss, commonly suffer from poor calibration and overconfident predictions, hindering their deployment in high-stakes clinical settings. This work is the first to uncover the root cause of this issue from a gradient perspective and introduces a novel “gradient vector field surgery” approach. By incorporating a scaling factor—linearly dependent on prediction error—into the partial derivatives of the loss function, the method enhances model calibration without altering the original loss structure. The proposed technique is highly generalizable and consistently improves calibration across diverse 2D and 3D medical segmentation tasks while preserving state-of-the-art segmentation accuracy.

medical image segmentationmodel miscalibrationoverconfidence

Adaptive Voxel-Weighted Loss Using L1 Norms in Deep Neural Networks for Detection and Segmentation of Prostate Cancer Lesions in PET/CT Images

Feb 04, 2025
OD
O. Dzikunu
🏛️ University of British Columbia | BC Cancer Research Institute | Vector Institute

Automatic detection and segmentation of prostate cancer metastases in PSMA PET/CT images remains challenging due to small lesion under-segmentation, blurred boundaries in large lesions, and performance degradation caused by lesion diffusion. Method: We propose the L1-weighted Dice Focal Loss (L1DFL), the first voxel-wise adaptive weighting scheme based on the L1 norm, dynamically mitigating these issues. Our framework employs dual 3D architectures—Attention U-Net and SegResNet—fusing multimodal PET/CT input channels, augmented by an SUV-normalization-guided true-positive assignment strategy. Contribution/Results: Evaluated on 380 clinical cases, our method achieves a test-set F1 score improvement of ≥6% over standard Dice Loss and 34% over Dice Focal Loss. It significantly reduces false positives and enhances robustness across multiscale lesion segmentation, demonstrating superior generalizability and clinical applicability.

Addresses variability in lesion characteristics affecting segmentation accuracy.Develops L1-weighted Dice Focal Loss for PET/CT image analysis.Enhances detection and segmentation of prostate cancer lesions.

Traditional pixel-wise loss functions for cerebral artery segmentation in digital subtraction angiography (DSA) sequences neglect geometric and physical consistency, leading to fragmented boundaries and unstable predictions. To address this, we propose a physics-informed loss (PIL) that, for the first time, incorporates dislocation theory from materials physics into medical image segmentation—modeling elastic interactions along vascular boundaries to physically regularize contour evolution. PIL is architecture-agnostic and seamlessly integrates with mainstream segmentation frameworks—including U-Net, U-Net++, SegFormer, and MedFormer—jointly optimizing pixel-wise overlap and boundary dynamics. Evaluated on the DIAS and DSCA datasets, PIL significantly improves sensitivity, F1 score, and boundary coherence, consistently outperforming cross-entropy, Dice, and active contour losses. The implementation is publicly available.

Addresses fragmented vessel predictions by enforcing geometric boundary consistencyDevelops physics-informed loss for robust cerebral artery segmentation in DSA sequencesImproves segmentation precision through physics-based vascular boundary regularization

In semantic segmentation, slender structures and densely packed object boundaries often suffer from ambiguous delineation, while small objects are prone to misclassification or omission. Existing distance-transform-based weighted loss functions incur substantial computational overhead and lack prediction adaptability. To address these issues, we propose Multi-scale Adaptive Weighting Loss (MAW-Loss), the first loss formulation incorporating a guided pyramid into loss design. MAW-Loss employs prediction-driven frequency-domain decomposition and cross-scale weight mapping to generate end-to-end differentiable, dynamic weight maps in real time—eliminating explicit distance transforms. Evaluated on SNEMI3D, GlaS, and DRIVE benchmarks, MAW-Loss consistently outperforms 11 state-of-the-art loss functions, achieving significant gains in Dice score and pixel accuracy. Its computational overhead is negligible, and the implementation is publicly available.

Enhances multiscale feature representation in segmentation tasksImproves semantic segmentation accuracy for fine structuresReduces computational cost of adaptive weight map generation

Longitudinal segmentation of multiple sclerosis (MS) lesions faces severe data and output imbalance challenges, particularly degrading performance on small lesions, boundary regions, and distance-sensitive metrics. To address this, we propose HyTver, a novel hybrid loss function that integrates an enhanced Dice loss with weighted cross-entropy and incorporates distance-aware regularization to jointly optimize segmentation accuracy and geometric consistency. HyTver requires no complex hyperparameter tuning and demonstrates superior training stability when applied to pre-trained models. Evaluated on the public MSLesion dataset, our method achieves a Dice score of 0.659 and significantly outperforms mainstream loss functions in distance-based metrics—including Hausdorff Distance (HD) and Average Symmetric Surface Distance (ASSD)—demonstrating its effectiveness in multi-objective optimization and robustness to lesion-scale variability and boundary ambiguity.

Addresses input and output imbalance in MS lesion segmentationEnsures balanced performance across region and distance metricsProposes a hybrid loss function to improve segmentation performance

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This work addresses the challenge of out-of-distribution generalization in geospatial data across regions, where distributional shifts hinder model transfer and existing approaches lack effective means to quantify domain discrepancies. To this end, we propose GeoSpOT, which for the first time integrates optimal transport theory with geographic coordinate encoding to construct a geospatial inter-domain distance metric using only latitude and longitude. Notably, GeoSpOT requires no downstream task data to quantify domain shift or predict model transfer performance. Experimental results demonstrate that the GeoSpOT distance accurately forecasts cross-regional generalization outcomes and effectively guides data selection and identification of high-risk regions.

cross-region adaptationdistribution distancedomain shift

Ideal Registration? Segmentation is All You Need

Sep 19, 2025
XC
Xiang Chen
🏛️ Hunan University | Shanghai Normal University | Cornell University

Existing image registration methods rely on global smooth regularization, limiting their ability to model regionally heterogeneous deformations inherent in anatomical motion. To address this, we propose SegReg—a segmentation-driven medical image registration framework that leverages anatomical segmentation maps to guide region-adaptive deformation field estimation. SegReg decomposes global regularization into localized subregion optimizations and establishes, for the first time, an approximately linear relationship between registration accuracy and segmentation quality. Specifically, it employs a deep learning-based segmentation network to delineate anatomical subregions and computes local displacement fields in parallel within a unified registration backbone, subsequently fusing them into a globally consistent deformation field. Evaluated on multi-center cardiac, abdominal, and pulmonary datasets, SegReg achieves average improvements of 2–12% over state-of-the-art methods. With ground-truth segmentations, it attains a Dice score of 98.23% for critical structures, significantly enhancing anatomical consistency and registration robustness.

Addresses globally uniform smoothness constraints in registrationHandles regionally varying deformations in anatomical motionTransforms registration challenge into segmentation problem

This study addresses the performance degradation in cardiac structure segmentation from multi-source partially labeled echocardiograms, caused by domain shift and diverse missing label patterns. It presents the first systematic comparison of three loss functions—adaptive categorical cross-entropy (aCCE), Boundary Loss, and adaptive binary cross-entropy (aBCE)—across complex partial labeling scenarios, including single-domain versus cross-domain settings and single-label versus multi-label missingness. Experimental results demonstrate that Boundary Loss achieves the best performance in cross-domain tasks with multi-label missingness, while both aBCE and Boundary Loss significantly outperform other methods under cross-domain conditions with single-label missingness. All approaches exhibit robust performance in single-domain tasks. This work provides empirical evidence and practical guidance for selecting loss functions in partially labeled medical image segmentation.

cardiac structure segmentationechocardiography segmentationmulti-domain learning

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