perform simulation-based calibration

Design and execute simulation-based calibration (SBC) workflows that generate data from a model, run inference to obtain posterior samples, and aggregate rank-based diagnostics across many simulated datasets; analyze those diagnostics to detect estimation bias, miscalibration, sampler or software errors, and to quantify the reliability of posterior inference.

performsimulation-basedcalibration

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Must-Read Papers

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Primed Priors for Simulation-Based Validation of Bayesian Models

Aug 12, 2024
LF
Luna Fazio
🏛️ TU Dortmund University | University of Stuttgart

In simulation-based calibration (SBC) for Bayesian models, prior specification faces a fundamental trade-off: overly broad priors risk numerical instability, while overly narrow ones reduce sensitivity to inferential failures—yet ground-truth data are often unavailable for calibration. Method: We propose *primed priors*, an adaptive, data-free prior construction framework extending catalytic priors. It integrates parameter-space sensitivity analysis with SBC-specific objective-driven design to enhance detection of common inferential pathologies—such as posterior shrinkage miscalibration and marginal inconsistency—while ensuring numerical robustness. Contribution/Results: Three simulation studies demonstrate that primed priors significantly improve SBC’s failure detection rate over standard priors and completely avoid computational breakdowns induced by extreme parameter values. To our knowledge, this is the first SBC-tailored, interpretable, and data-agnostic prior generation method.

Choosing proper priors for generative models is challengingProposing primed priors to avoid real data dependency in SBCValidating Bayesian models via simulation-based calibration (SBC)

Approximate Bayesian inference often underestimates true uncertainty due to posterior credible intervals that are excessively narrow. This work proposes two simulation-based calibration (SBC)-driven methods for recalibrating approximate posteriors, systematically leveraging the SBC framework to adjust the width of posterior uncertainty intervals and achieve marginal calibration. The approach is applicable to complex model structures, including hierarchical models, and demonstrates consistent efficacy across diverse experimental settings by meaningfully widening posterior intervals. As a result, the proposed recalibration substantially enhances the calibration accuracy and reliability of approximate Bayesian inference.

approximate posteriorBayesian inferenceposterior recalibration

Sbi Reloaded: a Toolkit for Simulation-based Inference Workflows

Nov 26, 2024
JB
Jan Boelts
🏛️ University of Tübingen | Tübingen AI Center | TransferLab | appliedAI Institute for Europe | ML Colab | Cluster ML in Science | Google Research | Helmholtz-Zentrum Dresden-Rossendorf | Université Paris-Saclay | INRIA | CEA | Robert Bosch GmbH | School of Informatics | University of Edinburgh | University of Amsterdam | Research and Innovation Center | BMW Group | Institute for Applied Mathematics and Scientific Computing | University of the Bundeswehr Munich | Aix Marseille | INSERM | INS | TU Darmstadt | h

Likelihood-free and gradient-free parameter calibration in black-box simulators poses significant challenges for Bayesian inference. Method: This paper introduces the first simulation-based, fully amortized, gradient-free, and parallelizable neural Bayesian inference framework, accompanied by the open-source PyTorch package SBI. The framework unifies neural posterior estimation (NPE), neural likelihood estimation (NLE), neural ratio estimation (NRE), and mixture density networks (MDNs), integrating Monte Carlo sampling, Bayesian optimization, and simulation scheduling into a modular, end-to-end workflow with production-ready defaults and comprehensive diagnostic tools. Contribution/Results: Evaluated across physics, biology, and astronomy, SBI substantially lowers the barrier to simulation-based inference, accelerates posterior estimation by multiple-fold, and achieves state-of-the-art reusability and scalability.

Enabling Bayesian inference without likelihood evaluationsProviding flexible tools for simulation-based inference workflowsTuning simulator parameters to match observed data

Simulation-based validation of Bayes factor computation

Aug 15, 2025
MM
Martin Modrák
🏛️ Charles University | University of Freiburg | TU Dortmund

This study addresses the lack of reliable validation mechanisms for Bayes factor computations. To this end, we propose two novel calibration methods: (1) an enhanced simulation-based calibration (SBC) procedure, specifically adapted to handle posterior distributions under improper priors; and (2) a binary-prediction-based calibration metric. We comparatively evaluate these against established approaches—including data-averaged posterior checks and the Good test—and find that binary-prediction calibration achieves higher sensitivity under limited computational budgets, whereas SBC detects a broader spectrum of inferential errors. Empirical experiments demonstrate that mainstream R packages—such as *bridgesampling* and *BayesFactor*—exhibit robust performance under default settings. We recommend that new implementations conduct at least several hundred simulation-based calibration runs for rigorous validation. Overall, this work establishes a more efficient and robust framework for validating Bayesian inference, particularly in Bayes factor computation.

Comparing sensitivity of SBC and binary prediction calibrationDetecting computational errors in Bayes factor methodsValidating Bayes factor computation accuracy

Simulations in Statistical Workflows

Mar 31, 2025
PB
Paul-Christian Burkner
🏛️ TU Dortmund University | Independent Scientist | Rensselaer Polytechnic Institute

This paper systematically examines the structural role and evolutionary trajectory of simulation methods across the statistical lifecycle. Addressing the current fragmentation and conceptual ambiguity in simulation practice, the study introduces, for the first time, a comprehensive functional taxonomy—spanning model specification, diagnostic checking, validation, and inference—and proposes a “simulation-driven” paradigm for statistical practice, prioritizing computational scalability. Methodologically, it integrates Monte Carlo simulation, approximate Bayesian computation (ABC), simulation-based calibration, and posterior predictive checking, implemented via high-performance computing frameworks to enable large-scale empirical analysis. Key contributions are: (1) establishing simulation as foundational statistical infrastructure; (2) providing an actionable roadmap for algorithm design, statistical software development, and pedagogical reform; and (3) advancing a paradigm shift in statistical practice—from model-centric to simulation-augmented inference.

Analyzing trends in simulation-based statistical algorithmsExamining simulation roles in statistical workflowsExploring future impacts of simulations on statistics

Latest Papers

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This study addresses the challenges of inefficient posterior estimation and difficult calibration in simulation-based inference (SBI) for models with intractable likelihoods but accessible forward simulators. We propose a sequential posterior estimation framework based on Gaussian mixture-of-experts surrogates. By leveraging localized conditional density approximations to construct proposal distributions, the method corrects the posterior via amortized ratio estimation and importance sampling. Furthermore, we introduce a localized simulation-based calibration (SBC) approach that efficiently reuses surrogates across broad neighborhoods at low computational cost. The effectiveness of this framework is validated through three case studies involving real-world epidemiological data, demonstrating substantial improvements in both the computational efficiency and inferential accuracy of SBI.

calibrationimportance samplingintractable likelihoods

This work addresses inverse problems in science and engineering—such as parameter inference and detector response unfolding—by proposing a unified simulation-based inference (SBI) framework that systematically integrates Bayesian and frequentist perspectives. Leveraging machine learning techniques, including neural posterior estimation and neural likelihood estimation, the framework enables efficient and general-purpose parameter inference, with extensions to empirical Bayes and unfolding tasks. The paper provides a comprehensive review of SBI methodologies and their application paradigms, while also offering a thorough analysis of validation strategies and inherent limitations. By clarifying best practices and pitfalls, this study advances the reliable deployment and innovative application of SBI in scientific domains.

detector effectsinverse problemsmachine learning

Traditional hybrid experimental designs struggle to robustly control the frequentist operating characteristics of Bayesian decisions under model misspecification and lack efficient sample size determination methods applicable to generalized posteriors. This work proposes a computationally efficient experimental design framework that requires simulations at only two sample sizes and leverages extrapolation modeling of posterior summary functions to infer performance across the entire sample size space. This approach enables identification of the minimal sample size and decision rule satisfying desired operating characteristics. It represents the first general and scalable method for sample size planning under generalized posteriors, substantially reducing computational burden while enhancing robustness to model misspecification. The method’s validity and broad applicability within Bayesian M-estimation–type experiments are demonstrated through the redesign of an adaptive clinical trial with time-to-event outcomes.

Bayesian decision proceduresexperimental designgeneralized posteriors

This study addresses the problem of determining whether high-frequency monitoring data return to their pre-intervention baseline distribution following an intervention. The authors propose a sequential testing procedure that requires no assumptions about the underlying data distribution. The method constructs a discrepancy measure via universal inference and combines it with individualized empirical calibration to form a non-negative supermartingale, yielding an e-process that enables valid detection of the recovery time at any arbitrary stopping point without specifying a null model. Theoretical analysis provides finite-sample bounds on the calibration error, and both simulations and a clinical case study demonstrate the method’s superior performance in accurately identifying the time at which baseline conditions are restored.

distributional realignmenthigh-frequency monitoringintervention effect

Hot Scholars

ST

Stefan T. Radev

Assistant Professor, Rensselaer Polytechnic Institute
Deep LearningBayesian StatisticsStochastic ModelsMachine Learning
PC

Paul-Christian Bürkner

Full Professor of Computational Statistics, TU Dortmund University
Bayesian StatisticsUncertainty QuantificationSimulation-Based InferencePrior Specification
YY

Yaoliang Yu

University of Waterloo
Machine learningOptimization
PG

Philip Greengard

Flatiron Institute
computational statisticsnumerical analysisscientific computing
AH

Andreas Hellander

Associate Professor in Scientific Computing, Division of Scientific Computing, Department of
Computational Systems BiologyScientific ComputingCloud ComputingData Science